pyvipr
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Contents:
Installation
PyViPR Tutorial and PySB interface
PySB interface
Tellurium interface
Other graph formats interface
PyViPR Core Modules Reference
pyvipr
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Index
A
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C
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D
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E
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G
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H
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J
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M
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N
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P
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S
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T
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Y
A
atom_rules_view() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
C
cluster_rxns_by_rules_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
compartments_data_graph() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
D
dynamic_json_view() (in module pyvipr.network_viz.views)
dynamic_sp_comm_view() (pyvipr.pysb_viz.dynamic_viz.PysbDynamicViz method)
dynamic_sp_comp_view() (pyvipr.pysb_viz.dynamic_viz.PysbDynamicViz method)
dynamic_sp_view() (pyvipr.pysb_viz.dynamic_viz.PysbDynamicViz method)
(pyvipr.tellurium_viz.dynamic_viz.TelluriumDynamicViz method)
E
edges_colors_sizes() (pyvipr.pysb_viz.dynamic_viz.PysbDynamicViz method)
(pyvipr.tellurium_viz.dynamic_viz.TelluriumDynamicViz method)
G
gexf_view() (in module pyvipr.network_viz.views)
gml_view() (in module pyvipr.network_viz.views)
graph_merge_pair_edges() (pyvipr.pysb_viz.static_viz.PysbStaticViz static method)
graphml_view() (in module pyvipr.network_viz.views)
H
highlight_nodes_view() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
J
json_view() (in module pyvipr.network_viz.views)
M
matrix_bidirectional_rates() (pyvipr.pysb_viz.dynamic_viz.PysbDynamicViz method)
merge_nodes() (pyvipr.pysb_viz.static_viz.PysbStaticViz static method)
merge_reactions2rules() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
N
node_data() (pyvipr.pysb_viz.dynamic_viz.PysbDynamicViz method)
(pyvipr.tellurium_viz.dynamic_viz.TelluriumDynamicViz method)
nx_graph_dyn_view() (in module pyvipr.network_viz.views)
nx_graph_view() (in module pyvipr.network_viz.views)
P
parse_name() (in module pyvipr.pysb_viz.static_viz)
projected_bireactions_view() (in module pyvipr.pysb_viz.views)
projected_graph() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
projected_rules_view() (in module pyvipr.pysb_viz.views)
projected_species_from_bireactions_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
projected_species_from_rules_view() (in module pyvipr.pysb_viz.views)
PysbDynamicViz (class in pyvipr.pysb_viz.dynamic_viz)
PysbStaticViz (class in pyvipr.pysb_viz.static_viz)
pyvipr.network_viz.network_viz (module)
pyvipr.network_viz.views (module)
pyvipr.pysb_viz.dynamic_viz (module)
pyvipr.pysb_viz.static_viz (module)
pyvipr.pysb_viz.views (module)
pyvipr.tellurium_viz.dynamic_viz (module)
pyvipr.tellurium_viz.static_viz (module)
pyvipr.tellurium_viz.views (module)
S
sbgn_xml_view() (in module pyvipr.network_viz.views)
sif_view() (in module pyvipr.network_viz.views)
sim_model_dyn_view() (in module pyvipr.pysb_viz.views)
sp_comm_asyn_fluidc_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
sp_comm_asyn_lpa_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
sp_comm_dyn_view() (in module pyvipr.pysb_viz.views)
sp_comm_girvan_newman_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
sp_comm_greedy_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
sp_comm_label_propagation_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
sp_comm_louvain_hierarchy_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
(pyvipr.tellurium_viz.static_viz.TelluriumStaticViz method)
sp_comm_louvain_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
(pyvipr.tellurium_viz.static_viz.TelluriumStaticViz method)
sp_comp_dyn_view() (in module pyvipr.pysb_viz.views)
sp_comp_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
sp_dyn_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
sp_rules_fxns_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
sp_rules_graph() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
sp_rules_mod_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
sp_rules_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
sp_rxns_bidirectional_graph() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
sp_rxns_bidirectional_view() (in module pyvipr.pysb_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
sp_rxns_graph() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
(pyvipr.tellurium_viz.static_viz.TelluriumStaticViz method)
sp_rxns_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
(pyvipr.tellurium_viz.static_viz.TelluriumStaticViz method)
sp_view() (in module pyvipr.pysb_viz.views)
(in module pyvipr.tellurium_viz.views)
(pyvipr.pysb_viz.static_viz.PysbStaticViz method)
(pyvipr.tellurium_viz.static_viz.TelluriumStaticViz method)
species_graph() (pyvipr.pysb_viz.static_viz.PysbStaticViz method)
(pyvipr.tellurium_viz.static_viz.TelluriumStaticViz method)
T
TelluriumDynamicViz (class in pyvipr.tellurium_viz.dynamic_viz)
TelluriumStaticViz (class in pyvipr.tellurium_viz.static_viz)
Y
yaml_view() (in module pyvipr.network_viz.views)
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